Bioinformatics Laboratory Publications
Publications
2026 Publications
Wang Y, Higa L, Do S, Fang Z, Birn N, Deng Y, Wang Z, Du Z-Y. A CRISPR workshop series for diverse learners in Hawai’i: design, implementation, and outcomes across 3 years. J Microbiol Biol Educ. 2026 Apr 30;27(1):e0031525. doi: 10.1128/jmbe.00315-25. Epub 2026 Mar 23. PMID: 41870076; PMCID: PMC13131019.
Zhao J, Yang L, Qin Y, Zhang Y, Wang T, Wang J, Liao R, Green B, Cui G, Liao W, Qiao Y, Xu M, Yang H, Farrar C, Liang B, Li X, Xin X, Li X, Calvisi DF, Wang X, Deng Y, Wu Y, Chen X. Distinct molecular pathways regulated by activated AKT and YAP signaling during intrahepatic cholangiocarcinoma progression. J Hepatol. 2026 Mar 4:S0168-8278(26)00119-4. doi: 10.1016/j.jhep.2026.02.025. Epub ahead of print. PMID: 41791461.
Pandey A, Rai SK, Ma L, Higa L, Khadka V, Yang H, Deng Y. Combination Immunotherapy as a Promising Strategy to Overcome Immunotherapy Resistance: From Emergence to Next-Generation Approaches. Adv Sci (Weinh). 2026 Feb 25:e18960. doi: 10.1002/advs.202518960. Epub ahead of print. PMID: 41740058.
Zhang J, Du W, Deng Y, Yu H, Fei P. Understanding Cancer Health Disparities. Cancers (Basel). 2026 Jan 31;18(3):476. doi: 10.3390/cancers18030476. PMID: 41681948; PMCID: PMC12896701.
BioDIGS Consortium; Alberts T, Albritton CF, Alcazar R, Aljabri Z, Alvarez M, Aradhey A, Ayalew M, Azizian N, Balayah Y, Ball DD, Barragan E, Beshoar C, Best L, Biggane E, Biggane J, Blick J, Blosser M, Brown AK, Campbell MC, Canizares Z, Chanhuhwa FN, Chen Y, Chin DR, Chowdhury K, Collins T, Compton B, Da Silva J, Davis NR, DeCaro N, Delgadillo F, Deng Y, Duncan J, Egwu AC, Ekalle GD, Elnawam N, Enke R, Ewhe N, Ferrel MA, Fierst J, Freymiller G, Fuller K, Fulton-Wright L, Gaysinskaya V, Gill T, Gillespie E, Gonzalez Moreno P, Goodwin S, Graham N, Graham ME, Graves JL Jr, Grob E, Gutierrez R, Hager A, Hakim ST, Harris A, Hoffman AM, Hoffmann T, Horton AM, Hughes A, Humphries EM, Ikechi-Konkwo JS, Ishtiaq A, Jackson R, James JR, James K, Jamison SA, Jimenez A, Johnson R, Kauffman A, Kaur H, Kc K, Keeton A, Kelly OE, Kerr J, Kucher N, Kuehu DL, Larson WA, Lee J, Lee A, Leek JT, Lemaic D, Liburd LE 2nd, Lopez AF, Mahmanzar M, Mamae K, Manjikian R, Marone M, Marquez K, Martinson A, Mavruk Eskipehlivan S, Medrano A, Melendrez-Vallard M, Meller R, Méndez LB, Mendez Gonzalez MP, Mesquita N, Miller CM, Mohd-Ibrahim I, Mortensen P, Mosher S, Muja A, Nasrin N, Nasu M, Nguyen MH, Nguyen BT, Nishiguchi M, O’Connor LM, Okie D, Olowookorun T, Ostrovsky A, Ozuna K, Pandey A, Patel SB, Paul G, Pawar S, Pearson A, Petrik D, Platero J, Pontino C, Pratap AP, Pratap S, Qin Y, Rai SK, Ray N, Repesh E, Rhinehardt K, Roche B, Rodriguez A, Roy S, Roy S, Sawa A, Schatz MC, Sen SK, Serikawa R, Smith T, Smith L, Sniezek J, Stewart RD, Suarez-Martinez EB, Taganna J, Tan FJ, Tsotakos N, Udolisa N, Ulbricht K, Veo T, Vessio J, Walker L, Wang O, Wang Q, Wappel R, Wesby K, Whitford M, Wild N, Xie X, Yang H, York S, Zirkle L. Unearthing soil biodiversity through collaborative genomic research and education. Nat Genet. 2026 Jan;58(1):3-8. doi: 10.1038/s41588-025-02442-5. PMID: 41461908; PMCID: PMC12799090.
Liu S, Zhu J, Zhong H, Zhou D, Long Q, Zhang Z, Yang X, Wu Q, Cheng C, Wu J, Luu HN, Wang J, Zhao B, Wu C, Deng Y, Wu L. Investigating causal associations among inflammatory proteins, blood metabolites, and Alzheimer’s disease risk. BMC Psychiatry. 2026 May 4. doi: 10.1186/s12888-026-08136-4. Epub ahead of print. PMID: 42082960.
Hosseini ST, AminianToosi K, Nemati F, BishehKolaei R, Deng Y. Deciphering immune and cellular reprogramming during the progression from inflammatory bowel disease to colorectal cancer using multi-omics single-cell and spatial transcriptomics. J Transl Med. 2026 Apr 18;24(1):591. doi: 10.1186/s12967-026-08158-2. PMID: 42001187; PMCID: PMC13122952.