Bioinformatics Laboratory Publications
Publications
2007 Publications
Pirooznia M, Gong P, Zhang C, Perkins EJ, Deng Y. Creating a workflow for expressed sequence tags analysis. Biocomp 08. 2008;806-808.
Li P, Zhang C, Perkins EJ, Gong P, Deng Y. Inferring Gene Regulatory Network of Yeast Cell-Cycle using Dynamic Bayesian Network. Biocomp 08. 2008;801-805.
Gong P, Pirooznia M, Guan X, Vera JC, Liang C, Deng Y, Zhang C, Perkins EJ. A Strategy for High Throughput Microarray Oligo Probe Design Using 454 and Sanger Sequencing Data of Eisenia fetida Expressed Sequence Tags. Biocomp 08. 2008;1040-1043.
Li P, Zhang C, Perkins EJ, Gong P, Deng Y. Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks. BMC Bioinformatics. 2007;8(Suppl 7). doi: 10.1186/1471-2105-8-S7-S13. PMID: 18047712.
Yang JY, Yang MQ, Niemierko A, Deng Y. Non-Monotonic Radio-Sensitivity over Tumor Volumes on Adjuvant Radio Therapy. Proceedings of IEEE BIBE 2007. 2007;524-531.
Pirooznia M, Rawat A, Perkins EJ, Deng Y. An effective Interwoven loop design application for two-channel microarray experiments. Proceedings of IEEE BIBE 2007. 2007;187-191.
Rajendran KA, Li P, Zhang C, Deng Y. Parallel Training of Multi-class Support Vector Machines Using Sequential Minimal Optimization. Proceedings of International Conference on Machine Learning; Models, Technologies and Applications (MLMTA’07). 2007;31-37.
Zhang C, Dargan S, Lan H, Deng Y. Web-based Information Retrieval with Local and Global Link Analysis. Information and Knowledge Engineering (IKE’07), Proceedings of International Conference on Information and Knowledge Engineering (IKE’07). 2007;117-123.
Gong P, Guan X, Inouye LS, Pirooznia M, Indest KJ, Athow RS, Deng Y, Perkins EJ. Toxicogenomic Analysis Provides New Insights into Molecular Mechanisms of the Sublethal Toxicity of 2,4,6-Trinitrotoluene in Eisenia fetida. Environ Sci Technol. 2007;41:8195-8202. doi: 10.1021/es071463m. PMID: 18186358.
Pirooznia M, Gong P, Yang K, Perkins EJ, Deng Y. Analysis and functional annotation of expressed sequence tags from the Earthworm (Eisenia fetida). BMC Bioinformatics. 2007;8(Suppl 7). doi: 10.1186/1471-2105-8-S7-S7. PMID: 18047730.
Deng Y, Xu H, Riedel H. PSM/SH2-B distributes selected mitogenic receptor signals to distinct components in the PI3-kinase and MAP kinase signaling pathways. J Cell Biochem. 2007;100:557-573. doi: 10.1002/jcb.21062. PMID: 16960871.
Pirooznia M, Nagarajan V, Deng Y. GeneVenn – A Web Application for Comparison of Gene Lists Using Venn Diagrams. Bioinformation. 2007;1:420-422. doi: 10.6026/97320630001420. PMID: 17597932.
Pirooznia M, Deng Y. Efficiency of hybrid normalization of microarray gene expression: A simulation study. AINA Workshops (1). 2007;739-744.