Bioinformatics Laboratory Publications
Publications
2006 Publications
Zhang C, Li P, Rajendran A, Deng Y. Parallel Multicategory Support Vector Machines (PMC-SVM) for Classifying Microarray Data. BMC Bioinformatics. 2006;7(Suppl 4). doi: 10.1186/1471-2105-7-S4-S15. PMID: 17217507.
Yang K, Deng Y, Zhang C, Elasri M. Identification of New Members of Hydrophobin Family Using Primary Structure Analysis. BMC Bioinformatics. 2006;7(Suppl 4). doi: 10.1186/1471-2105-7-S4-S16. PMID: 17217508.
Thodima V, Pirooznia M, Deng Y. RiboaptDB: A Comprehensive Database of Ribozymes and Aptamers. BMC Bioinformatics. 2006;7(Suppl 2). doi: 10.1186/1471-2105-7-S2-S6. PMID: 17118149.
Deng Y, Dong Y, Thodima V, Clem RJ, Passarelli L. Analysis and functional annotation of expressed sequence tags from the fall armyworm Spodoptera frugiperda. BMC Genomics. 2006;7:264. doi: 10.1186/1471-2164-7-264. PMID: 17052344.
Chen D, Texada DE, Duggan C, Deng Y, Redens TB, Langford MP. Caspase-3 and -7 mediate apoptosis of human Chang’s conjunctival cells induced by enterovirus 70. Virology. 2006;347:307-322. doi: 10.1016/j.virol.2005.11.051. PMID: 16427675.
Pirooznia M, Deng Y. SVM Classifier – a comprehensive java interface for support vector machine classification of microarray data. BMC Bioinformatics. 2006;7(Suppl 4). doi: 10.1186/1471-2105-7-S4-S25. PMID: 17217518.
Nagarajan V, Kaushik N, Zhang C, Murali B, Lakhera S, Deng Y. A Fourier transformation based method to mine peptide space for antimicrobial activity. BMC Bioinformatics. 2006;7(Suppl 2). doi: 10.1186/1471-2105-7-S2-S2. PMID: 17118141.
Boyko EV, Smith CM, Vankatappa T, Bruno J, Deng Y, Starkey SR, Klaahsen DL. The Molecular Basis of Plant Gene Expression During Aphid Invasion: Wheat Pto- and Pti-like Sequences Modulate Aphid-Wheat Interactions. J Econ Entomol. 2006;99:1430-1445. doi: 10.1093/jee/99.4.1430. PMID: 16937702.
Deng Y, Kayarat D, Elasri MO, Brown SJ. Microarray data clustering using particle swarm optimization K-means algorithm. Pattern Recognition and Machine Intelligence. 2006;1:114-119.
Pondugula SR, Raveendran NN, Ergonul Z, Deng Y, Chen J, Sanneman JD, Palmer LG, Marcus DC. Glucocorticoid Regulation of Genes in the Amiloride-Sensitive Sodium Transport Pathway by Semicircular Canal Duct Epithelium of Neonatal Rat. Physiol Genomics. 2006;24:114-223. doi: 10.1152/physiolgenomics.00280.2004. PMID: 16263802.
Deng Y, Ni J, Zhang C. Development of computations in bioscience and bioinformatics and its application: review of the Symposium of Computations in Bioinformatics and Bioscience (SCBB|06). BMC Bioinformatics. 2006;7(Suppl 4). doi: 10.1186/1471-2105-7-S4-S1. PMID: 17217501.