Bioinformatics Laboratory Publications
Publications
2009 Publications
Liu Q, Sung AH, Chen Z, Liu J, Huang X, Deng Y. Feature Selection and Classification of MAQC-II Breast Cancer and Multiple Myeloma Microarray Gene Expression Data. PLoS One. 2009;4(12). doi: 10.1371/journal.pone.0008250. PMID: 20011591; PMCID: PMC2789087.
Yang M, Mao J, Arabnia HR, Deng Y. High-throughput next-generation sequencing technologies foster new cutting-edge computing techniques in bioinformatics. BMC Genomics. 2009;10(Suppl 1). doi: 10.1186/1471-2164-10-S1-I1. PMID: 19594867; PMCID: PMC2709308.
Ruan J, Deng Y, Zhang W. An ensemble learning approach to reverse-engineering transcriptional regulatory networks from time-series gene expression data. BMC Genomics. 2009;10(Suppl 1). doi: 10.1186/1471-2164-10-S1-S8. PMID: 19594885; PMCID: PMC2709314.
Wang Y, Wang G, Yang B, Tao H, Deng Y, Liu Y. Reconstruct Gene Regulatory Network using Slice Pattern Model. BMC Genomics. 2009;10(Suppl 1). doi: 10.1186/1471-2164-10-S1-S2. PMID: 19594879; PMCID: PMC2709309.
Gust KA, Pirooznia M, Quinn MJ Jr, Johnson MS, Escalon L, Indest KJ, Guan X, Clarke J, Deng Y, Gong P, Perkins EJ. Neurotoxicogenomic Investigations to Assess Mechanisms of Action of the Munitions Constituents RDX and 2,6-DNT in Northern Bobwhite (Colinus virginianus). Toxicol Sci. 2009;110(1):168-180. doi: 10.1093/toxsci/kfp092. PMID: 19417177.
Chen Z, McGee M, Liu Q, Kong M, Deng Y, Scheuermann RH. A Distribution-Free Convolution Model for Background Correction of Oligonucleotide Microarray Data. BMC Genomics. 2009;10(Suppl 1). doi: 10.1186/1471-2164-10-S1-S19. PMID: 19594878; PMCID: PMC2709307.
Chaitankar V, Zhang C, Ghosh P, Perkins EJ, Gong P, Deng Y. Gene Regulatory Network Inference Using Predictive Minimum Description Length Principle and Conditional Mutual Information. IJCBS. 2009;58-67.
Mao J, Shenwu M, Ruth M, Welti R, Deng Y. Lipidomic profiles reveal the potential useful plasma biomarkers associated with type II diabetes in black and white patients. BIOCOMP 09. 2009;774-779.
Liu Q, Qiao M, Chen Z, Huang X, Sung A, Deng Y. Comparison of feature selection and classification for MALDI-MS data. BMC Genomics. 2009;10(Suppl 1). doi: 10.1186/1471-2164-10-S1-S3. PMID: 19594880; PMCID: PMC2709310.
Majji S, Thodima V, Sample R, Whitley D, Deng Y, Mao J, Chinchar VG. Transcriptome analysis of frog virus 3, type species of the genus Ranavirus, family Iridoviridae. Virology. 2009;391:293-303. doi: 10.1016/j.virol.2009.06.021. PMID: 19608212.
Majji S, Thodima V, Arnizaut A, Deng Y, May W, Sittman D, Waldbieser GC, Hanson L, Cuchens MA, Bengten E, Chinchar VG. Expression profiles of cloned channel catfish (Ictalurus punctatus) lymphoid cell lines and mixed lymphocyte cultures. Dev Comp Immunol. 2009;33:224-234. doi: 10.1016/j.dci.2008.09.010. PMID: 18824023.
Milev-Milovanovic I, Majji S, Thodima V, Deng Y, Hanson L, Arnizaut A, Waldbieser G, Chinchar VG. Identification and expression analyses of poly [I]-stimulated genes in channel catfish (Ictalurus punctatus). Fish Shellfish Immunol. 2009;26:811-820. doi: 10.1016/j.fsi.2009.02.007. PMID: 19332135.
Pirooznia M, Crawford DL, Vanwye JD, Gibson R, Zhang C, Deng Y, McLean T. Genomic Resources for Karenia brevis. BIOCOMP 2009. 2009;228-234.