Bioinformatics Laboratory Publications
Publications
2010 Publications
Rawat A, Gust KA, Deng Y, Garcia-Reyero N, Quinn MJ Jr, Johnson MS, Indest K, Elasri MO, Perkins EJ. From raw materials to validated system: The construction of a genomic library and microarray to interpret systemic perturbations in Northern bobwhite. Physiol Genomics. 2010;42(2):219-235. doi: 10.1152/physiolgenomics.00143.2009. PMID: 20406850.
Zhang X, Wang T, Luo H, Tang J, Deng Y. 3D Protein structure prediction with genetic tabu search algorithm. BMC Syst Biol. 2010;4(Suppl 1). doi: 10.1186/1752-0509-4-S1-S8. PMID: 20522256.
Tang J, Guo S, Sun Q, Deng Y, Zhou D. Speckle reducing bilateral filter for cattle follicle segmentation. BMC Genomics. 2010;11(Suppl 2). doi: 10.1186/1471-2164-11-S2-S4. PMID: 21047380.
Wang J, Li M, Deng Y, Pan Y. Recent Advances in Clustering Methods for Protein Interaction Networks. BMC Genomics. 2010;11(Suppl 3). doi: 10.1186/1471-2164-11-S3-S10. PMID: 21047390.
Deng Y, Ai J, Xio PG. Application of bioinformatics and systems biology in medicinal plant studies. Tradit Chin Med Herbs (Engl). 2010;3:1-10.
Guo S, Tang J, Sun Q, Deng Y. An Improved Approach for the Segmentation of Starch Granules in Microscopic Images. BMC Genomics. 2010;11(Suppl 2). doi: 10.1186/1471-2164-11-S2-S13. PMID: 21047380.
Chowbina S, Deng Y, Ai J, Guan X, Wilbanks MS, Meyer SA, Perkins EJ, Chen JY. A new approach to construct pathway connected networks and its application in dose-responsive gene expression profiles of rat liver regulated by 2,4-DNT. BMC Genomics. 2010;11(Suppl 3). doi: 10.1186/1471-2164-11-S3-S4. PMID: 21047385.
Deng Y, Johnson DR, Guan X, Ai K, Ang CY. In vitro transcriptional gene regulatory networks predict in vivo function of liver perturbed by chemical stress. BMC Syst Biol. 2010;4(1):153. doi: 10.1186/1752-0509-4-153. PMID: 21073692.
Xu F, Li G, Li P, Li Y, Zhao C, Cui J, Deng Y, Shi T. Global protein interactome exploration through mining genome-scale data in Arabidopsis thaliana. BMC Genomics. 2010;11(Suppl 2). doi: 10.1186/1471-2164-11-S2-S2. PMID: 21047383.
Zhao C, Liu H, Li J, Deng Y, Shi T. Nucleosome Structure Incorporated Histone Acetylation Site Prediction in Arabidopsis thaliana. BMC Genomics. 2010;11(Suppl 2). doi: 10.1186/1471-2164-11-S2-S7. PMID: 21047388.
Pirooznia M, Pozhikov A, Ryan R, Perkins EJ, Deng Y. Generation and Analysis of Expressed Sequence Tags from the Sheepshead Minnow (Cyprinodon variegatus). BMC Genomics. 2010;11(Suppl 2). doi: 10.1186/1471-2164-11-S2-S4. PMID: 21047385.