Experimental Bioinformatics Laboratory

2015 Publications

McAninch EA, Jo S, Preite NZ, Farkas E, Mohácsik P, Fekete C, Egri P, Gereben B, Li Y, Deng Y, Patti EM, Peeters RP, Mash DC, Bianco AC. Prevalent polymorphism in thyroid hormone-activating enzyme leaves a genetic fingerprint that underlies associated clinical syndromes. J Clin Endocrinol Metab. 2015 Jan 8;100(2):444-452. doi: 10.1210/jc.2014-4092. PMID: 25555247.

Ye H, Zhou A, Hong Q, Tang L, Deng Y, Duan S. A lack of association between the IKZF2 rs12619285 polymorphism and coronary heart disease. Exp Ther Med. 2015;9(3):697-702. doi: 10.3892/etm.2015.2282. PMID: 25667697.

Ji N, Li J, Wei Z, Kong F, Jin H, Chen X, Li Y, Deng Y. Effect of Celastrol on Growth Inhibition of Prostate Cancer Cells through the Regulation of hERG Channel in Vitro. Biomed Res Int. 2015;2015:308475. doi: 10.1155/2015/308475. PMID: 26106446.

Li Y, Melnikov AA, Levenson V, Guerra E, Simeone P, Alberti S, Deng Y. A seven-gene CpG-island methylation panel predicts breast cancer progression. BMC Cancer. 2015 May 29;15:417. doi: 10.1186/s12885-015-1415-8. PMID: 26021939; PMCID: PMC4459822.

McAninch EA, Fonseca TL, Poggioli R, Panos AL, Salerno TA, Deng Y, Li Y, Bianco AC, Iacobellis G. Epicardial adipose tissue has a unique transcriptome that is downregulated in severe coronary artery disease. Obesity (Silver Spring). 2015 Sep;23(9):1807-1815. doi: 10.1002/oby.21059. PMID: 26096900.

Zhang F, Deng Y, Wang M, Cui L, Drabier R. Pathway-based biomarkers for breast cancer in proteomics. Cancer Inform. 2015;13(S5):101-108. doi: 10.4137/CIN.S25124. PMID: 26005740; PMCID: PMC4454597.

Li Y, Rouhi O, Chen H, Ramirez R, Wagner S, Borgia JA, Deng Y. RNA-Seq and Network Analysis Revealed Interacting Pathways in TGF-treated Lung Cancer Cell Lines. Cancer Inform. 2015;13(S5):129-140. doi: 10.4137/CIN.S25125. PMID: 26005745; PMCID: PMC4454595.

Deng Y, Wang H, Hamamoto R, Schaffer D, Duan S. Functional genomics, genetics, and bioinformatics. Biomed Res Int. 2015;2015:184824. doi: 10.1155/2015/184824. PMID: 25784939; PMCID: PMC4353901.

O’Keefe JA, Robertson-Dick E, Dunn E, Fiutko A, Li Y, Deng Y, Berry-Kravis E, Hall DA. Characterization and early detection of balance deficits in Fragile X premutation carriers with and without fragile X-associated tremor/ataxia syndrome (FXTAS). Cerebellum. 2015 Jun;14(3):292-300. doi: 10.1007/s12311-015-0651-8. PMID: 25763861.

Zhang W, Yu Y, Hertwig F, Thierry-Mieg J, Zhang W, Thierry-Mieg D, Wang J, Furlanello C, Devanarayan V, Cheng J, Deng Y, et al. Comparison of RNA-seq and microarray-based models for clinical endpoint prediction. Genome Biol. 2015;16:133. doi: 10.1186/s13059-015-0694-1. PMID: 26104636; PMCID: PMC4480778.